CERR is MATLAB based software platform for developing and sharing research results using radiation therapy treatment planning and imaging informatics. CERR has a wide variety of dose, imaging, and structure analysis and comparison tools. CERR is open-source and GNU GPL copyrighted. (GitHub - cerr/CERR: Matlab/Octave based platform for Radiological Research.)
Features:
Deep learning segmentation
Radiomics
User-friendly access to RT and Radiology meta-data
Outcomes Modeling
IMRTP
Data Import
Contouring
3 DIRART
DIRART is a MATLAB toolbox, as well as a stand-alone MATLAB application, for deformable image registration (DIR) and adaptive radiotherapy (ART) research. It contains well implemented DIR algorithms and the essential functions for ART applications.
The name DIRART stands for DIR+ART.
You need MATLAB to run DIRART. You need CERR (http://code.google.com/p/cerr/) as well. 4 OpenREGGUI---Image processing & proton physics
Image processing, open-source platform for research in proton therapy. A multi-purpose Matlab-based software used in many radiotherapy publications.
Image processing
Rigid and non-rigid registration
Proton physics
Clinical indicators
DICOM import/export
5 MCsquare---Fast MC dose computation
MCsquare is a fast Monte Carlo code, developed to simulate proton PBS treatments with the accuracy and calculation speed required in the clinic. Written in C programming language, the algorithm was designed and optimized to exploit the computational power of modern multi-core CPUs.
Multipurpose simulations
3D & 4D dose calculation
Dose to water conversion
DVH, LET computation
Prompt gamma emission profiles
Simulation of treatment uncertainties
Beamlet for plan optimization
Workflow integration
OpenREGGUI plugin integration
Matlab graphical user interface
Workflow management
6 MIROpt---Robust dose optimizer 3D/4D
MIROpt is a Matlab-based software package serving to robustly optimize a treatment plan. To compute the dose, it relies on the MCsquare dose engine. Nonetheless, it allows compatibility with other dose engines. For optimization it uses the C++ Ipopt function optimization libraries.
Robust optimization
Worst case scenario
MC dose accuracy
Systematic setup errors
Random setup errors (multiple SD)
Range errors
4D-dose calculation (multiple 4DCT)
Dose per beamlet calculation
DVH calculation
Workflow integration
OpenREGGUI plugin integration
Matlab graphical user interface
Workflow management
7 RTK---Image reconstruction toolkit
RTK is an open-source and cross-platform software for fast circular cone-beam CT reconstruction based on the Insight Toolkit (ITK). RTK is developped by the RTK consortium.
Features
Basic operators for reconstruction: filtering, forward and backward projections
Multithreaded CPU and GPU versions
Tools for respiratory motion correction
I/O for several scanners
Preprocessing of raw data for scatter correction
8 3DSlicer---Image vizualization and processing
3D Slicer is an open source software platform for medical image informatics, image processing, and three-dimensional visualization. Built with support from the National Institutes of Health and a worldwide developer community, Slicer brings free, powerful cross-platform processing tools to physicians, researchers, and the general public.
Features
Powerful image processing
Streamlined interface
Modular and extensible platform
9 Plastimatch---医学图像配准
10 ITK-SNAP --- segment structures in 3D medical images